alpha_diversity:metrics shannon,simpson,observed_otus,PD_whole_tree,chao1,equitability beta_diversity:metrics unweighted_unifrac,weighted_unifrac,bray_curtis,euclidean make_emperor:number_of_segments 14 make_rarefaction_plots:resolution 600 alpha_rarefaction:num_steps 20 make_rarefaction_plots:generate_average_tables True