An Introduction to QIIME 1.9.1
Introduction
Before Getting Started
Installing QIIME
macOS
MacQIIME (Complete)
Anaconda (Basic)
Linux
Windows
Preparing a Mapping File
Preparing a Parameters file
Preparing Sequence Data
Forward/Reverse with an Index
De-multiplexed FASTQ
Processing Sequences
Managing the OTU Table
Sample Filtering
Taxa Filtering
Analyzing the OTU Table
Alpha Diversity Analysis
Beta Diversity Analysis
Taxonomic Composition Analysis
Core Diversity Analysis
Phyloseq
LEfSe
PICRUSt
Predict metagenomic functions
Analyzing results in QIIME
Pathway reconstruction humann2
Metagenomic contributions
QIITA
MaAslin
Advanced Tutorials
Removing Human Contamination
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GitBook
Windows
Windows
Install
Ubuntu
or see
http://qiime.org/install/virtual_box.html
(You will need a 64-bit computer)
Another option is to use Amazon Web Services (AWS)
http://qiime.org/1.9.0/tutorials/working_with_aws.html
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